Answer:
No, his Fourth Amendment rights were not violated because the Amendment specifies that "upon probable cause, supported by Oath or affirmation" a person's home, personal property, and documents can be searched and seized by the legal authorities.
In this case, the FBI obtained a federal search warrant before entering Mr. Flammer's house. This federal search warrant is a valid legal document that allowed the FBI officials to seek information in his house, and on his computer. The FBI officials acted in a way that is coherent with the U.S. Constitution.